You must select the system preference I Use Departments; if Departments Are Not Assigned to All P&L Accounts... to have the option to assign one or more departments to each line item in a transaction.
Allocating jobs or departments by an amount and/or percentage is available in the following windows:
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Click in the Job or Dept column for a line item in a transaction. The Allocate Jobs or Allocate Departments window appears.
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In the Amount/Percentage column enter the amount/percentage for each job or department selected.
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Click OK to accept the changes and close the window.
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